Use Cases

Tutorials, protocols, and use cases are different things. A tutorial teaches you one function. A protocol teaches you a workflow that answers one biological question. A use case goes one level up: it reproduces a published study end to end with AAanalysis, so you can see that a real result drops out of the standard pipeline — and use it as the template to adapt to your own paper-style analysis. Where a use case calls a tool, it links to that tool’s tutorial for the mechanics instead of repeating them, so the three stay distinct with no overlap.

Each use case runs from bundled data only (no downloads) and is a simplified, fast reproduction: it reproduces the key results and the biology, and points to the Protocols for scaling up to the full study.

• Charting γ-secretase substrates by explainable AI