aaanalysis.display_df
- aaanalysis.display_df(df=None, max_width_pct=100, max_height=300, char_limit=30, show_shape=False, n_rows=None, n_cols=None, row_to_show=None, col_to_show=None)[source]
Display DataFrame with specific style as HTML output for jupyter notebooks.
Added in version 0.1.3.
- Parameters:
df (pd.DataFrame) – DataFrame to be displayed as HTML output.
max_width_pct (int, default=100) – Maximum width in percentage of main page for table.
max_height (int, default=300) – Maximum height in pixels of table.
char_limit (int, default=30) – Maximum number of characters to display in a cell.
show_shape (bool, default=False) – If
True, shape ofdfis printed.n_rows (int, optional) – Display only the first n rows. If negative, last n rows will be shown.
n_cols (int, optional) – Display only the first n columns. If negative, last n columns will be shown.
row_to_show (int or str, optional) – Display only the specified row.
col_to_show (int or str, optional) – Display only the specified column.
Examples
The DataFrame to be displayed by jupyter notebooks can be adjusted using the
display_dffunction:import aaanalysis as aa df_cat = aa.load_scales(name="scales_cat") aa.display_df(df_cat, show_shape=True)
DataFrame shape: (586, 5)
scale_id category subcategory scale_name scale_description 1 LINS030110 ASA/Volume Accessible surface area (ASA) ASA (folded coil/turn) Total median ac...s et al., 2003) 2 LINS030113 ASA/Volume Accessible surface area (ASA) ASA (folded coil/turn) % total accessi...s et al., 2003) 3 JANJ780101 ASA/Volume Accessible surface area (ASA) ASA (folded protein) Average accessi...n et al., 1978) 4 JANJ780103 ASA/Volume Accessible surface area (ASA) ASA (folded protein) Percentage of e...n et al., 1978) 5 LINS030104 ASA/Volume Accessible surface area (ASA) ASA (folded protein) Total median ac...s et al., 2003) 6 LINS030107 ASA/Volume Accessible surface area (ASA) ASA (folded protein) % total accessi...s et al., 2003) 7 CHOC760102 ASA/Volume Accessible surface area (ASA) ASA (folded proteins) Residue accessi...(Chothia, 1976) 8 LINS030116 ASA/Volume Accessible surface area (ASA) ASA (folded β-strand) Total median ac...s et al., 2003) 9 LINS030119 ASA/Volume Accessible surface area (ASA) ASA (folded β-strand) % total accessi...s et al., 2003) 10 LINS030103 ASA/Volume Accessible surface area (ASA) Hydrophilic ASA Hydrophilic acc...s et al., 2003) 11 LINS030112 ASA/Volume Accessible surface area (ASA) Hydrophilic ASA...lded coil/turn) Hydrophilic med...s et al., 2003) 12 LINS030115 ASA/Volume Accessible surface area (ASA) Hydrophilic ASA...lded coil/turn) % Hydrophilic a...s et al., 2003) 13 LINS030106 ASA/Volume Accessible surface area (ASA) Hydrophilic ASA...olded proteins) Hydrophilic med...s et al., 2003) 14 LINS030109 ASA/Volume Accessible surface area (ASA) Hydrophilic ASA...olded proteins) % Hydrophilic a...s et al., 2003) 15 LINS030118 ASA/Volume Accessible surface area (ASA) Hydrophilic ASA...olded β-strand) Hydrophilic med...s et al., 2003) 16 LINS030121 ASA/Volume Accessible surface area (ASA) Hydrophilic ASA...olded β-strand) % Hydrophilic a...s et al., 2003) 17 LINS030114 ASA/Volume Accessible surface area (ASA) Hydrophobic ASA...lded coil/turn) % Hydrophobic a...s et al., 2003) 18 LINS030108 ASA/Volume Accessible surface area (ASA) Hydrophobic ASA...folded protein) % Hydrophobic a...s et al., 2003) 19 LINS030120 ASA/Volume Accessible surface area (ASA) Hydrophobic ASA...olded β-strand) % Hydrophobic a...s et al., 2003) 20 GUYH850104 ASA/Volume Accessible surface area (ASA) Partition energy Apparent partit...dex (Guy, 1985) 21 GUYH850105 ASA/Volume Accessible surface area (ASA) Partition energy Apparent partit...dex (Guy, 1985) 22 RACS770103 ASA/Volume Accessible surface area (ASA) Side chain orientation Side chain orie...Scheraga, 1977) 23 VHEG790101 ASA/Volume Accessible surface area (ASA) TFE to lipophilic phase Transfer free e...Blomberg, 1979) 24 BIOV880101 ASA/Volume Buried Buriability Information val...u et al., 1988) 25 BIOV880102 ASA/Volume Buried Buriability Information val...u et al., 1988) 26 WERD780101 ASA/Volume Buried Buriability Propensity to b...Scheraga, 1978) 27 ZHOH040103 ASA/Volume Buried Buriability Buriability (Zhou-Zhou, 2004) 28 ARGP820103 ASA/Volume Buried Buried Membrane-buried...s et al., 1982) 29 CHOC760103 ASA/Volume Buried Buried Proportion of r...(Chothia, 1976) 30 CHOC760104 ASA/Volume Buried Buried Proportion of r...(Chothia, 1976) 31 JANJ780102 ASA/Volume Buried Buried Percentage of b...n et al., 1978) 32 JANJ790101 ASA/Volume Buried Buried Ratio of buried...s (Janin, 1979) 33 OLSK800101 ASA/Volume Buried Buried Average interna...s (Olsen, 1980) 34 NISK800101 ASA/Volume Buried Interactivity 8 A contact num...kawa-Ooi, 1980) 35 WARP780101 ASA/Volume Buried Interactivity Average interac...e-Morgan, 1978) 36 LINS030111 ASA/Volume Hydrophobic ASA Hydrophobic ASA...lded coil/turn) Hydrophobic med...s et al., 2003) 37 LINS030105 ASA/Volume Hydrophobic ASA Hydrophobic ASA...olded proteins) Hydrophobic med...s et al., 2003) 38 LINS030117 ASA/Volume Hydrophobic ASA Hydrophobic ASA...olded β-strand) Hydrophobic med...s et al., 2003) 39 PONP800107 ASA/Volume Partial specific volume Accessibility reduction ratio Accessibility r...y et al., 1980) 40 ZIMJ680102 ASA/Volume Partial specific volume Bulkiness Bulkiness (Zimm...n et al., 1968) 41 LINS030102 ASA/Volume Partial specific volume Hydrophobic ASA Hydrophobic acc...s et al., 2003) 42 BASU050101 ASA/Volume Partial specific volume Interactivity Interactivity s...a et al., 2005) 43 BASU050103 ASA/Volume Partial specific volume Interactivity Interactivity s...a et al., 2005) 44 NISK860101 ASA/Volume Partial specific volume Interactivity 14 A contact nu...kawa-Ooi, 1986) 45 BULH740102 ASA/Volume Partial specific volume Partial specific volume Apparent partia...l-Breese, 1974) 46 COHE430101 ASA/Volume Partial specific volume Partial specific volume Partial specifi...n-Edsall, 1943) 47 PLIV810101 ASA/Volume Partial specific volume Partition coefficient Partition Coeff...a et al., 1981) 48 CHOC760101 ASA/Volume Volume Accessible surface area (ASA) Residue accessi...(Chothia, 1976) 49 LINS030101 ASA/Volume Volume Accessible surface area (ASA) Total accessibl...s et al., 2003) 50 RADA880106 ASA/Volume Volume Accessible surface area (ASA) Accessible surf...olfenden, 1988) 51 ROSG850101 ASA/Volume Volume Mean area buried Mean area burie...e et al., 1985) 52 BIGC670101 ASA/Volume Volume Volume Residue volume (Bigelow, 1967) 53 CHOC750101 ASA/Volume Volume Volume Average volume ...(Chothia, 1975) 54 DAWD720101 ASA/Volume Volume Volume Size (Dawson, 1972) 55 FAUJ880103 ASA/Volume Volume Volume Normalized van ...e et al., 1988) 56 GOLD730102 ASA/Volume Volume Volume Residue volume ...halifoux, 1973) 57 GRAR740103 ASA/Volume Volume Volume Volume (Grantham, 1974) 58 HARY940101 ASA/Volume Volume Volume Mean volumes of...z et al., 1994) 59 KRIW790103 ASA/Volume Volume Volume Side chain volu...Komoriya, 1979) 60 LEVM760106 ASA/Volume Volume Volume van der Waals p... (Levitt, 1976) 61 PONJ960101 ASA/Volume Volume Volume Average volumes...s et al., 1996) 62 TSAJ990101 ASA/Volume Volume Volume Volumes includi...i et al., 1999) 63 TSAJ990102 ASA/Volume Volume Volume Volumes not inc...i et al., 1999) 64 FASG760101 ASA/Volume Volume Weight Molecular weigh... (Fasman, 1976) 65 DAYM780101 Composition AA composition AA composition Amino acid comp... et al., 1978a) 66 JOND920101 Composition AA composition AA composition Relative freque...s et al., 1992) 67 JUKT750101 Composition AA composition AA composition Amino acid dist...s et al., 1975) 68 JUNJ780101 Composition AA composition AA composition Sequence freque... (Jungck, 1978) 69 NAKH900101 Composition AA composition AA composition AA composition ...a et al., 1990) 70 NAKH900102 Composition AA composition AA composition SD of AA compos...a et al., 1990) 71 CEDJ970102 Composition AA composition AA composition (anchored) Composition of ...o et al., 1997) 72 CEDJ970101 Composition AA composition AA composition (EXT) Composition of ...o et al., 1997) 73 CEDJ970104 Composition AA composition AA composition (INT) Composition of ...o et al., 1997) 74 NAKH920107 Composition AA composition Membrane protei...-spanning, EXT) AA composition ...ishikawa, 1992) 75 NAKH920106 Composition AA composition Membrane protei...-spanning, INT) AA composition ...ishikawa, 1992) 76 NAKH920103 Composition AA composition Membrane protei...-spanning, EXT) AA composition ...ishikawa, 1992) 77 NAKH920104 Composition AA composition Membrane protei...-spanning, EXT) AA composition ...ishikawa, 1992) 78 NAKH920101 Composition AA composition Membrane protei...-spanning, INT) AA composition ...ishikawa, 1992) 79 NAKH920102 Composition AA composition Membrane protei...-spanning, INT) AA composition ...ishikawa, 1992) 80 CEDJ970105 Composition AA composition Nuclear proteins Composition of ...o et al., 1997) 81 FUKS010112 Composition AA composition Nuclear proteins Entire chain co...ishikawa, 2001) 82 KUMS000102 Composition AA composition Proteins of mesophiles Distribution of...r et al., 2000) 83 FUKS010111 Composition AA composition Proteins of mesophiles (EXT) Entire chain co...ishikawa, 2001) 84 FUKS010110 Composition AA composition Proteins of mesophiles (INT) Entire chain co...ishikawa, 2001) 85 KUMS000101 Composition AA composition Proteins of thermophiles Distribution of...r et al., 2000) 86 KUMS000103 Composition AA composition Proteins of thermophiles Distribution of...r et al., 2000) 87 FUKS010109 Composition AA composition Proteins of thermophiles (INT) Entire chain co...ishikawa, 2001) 88 DIGM050101 Composition AA composition (surface) Hydrostatic pressure Hydrostatic Pre...i Giulio, 2005) 89 FUKS010104 Composition AA composition (surface) Nuclear proteins Surface composi...ishikawa, 2001) 90 FUKS010103 Composition AA composition (surface) Proteins of mesophiles (EXT) Surface composi...ishikawa, 2001) 91 FUKS010102 Composition AA composition (surface) Proteins of mesophiles (INT) Surface composi...ishikawa, 2001) 92 FUKS010101 Composition AA composition (surface) Proteins of thermophiles (INT) Surface composi...ishikawa, 2001) 93 CEDJ970103 Composition Membrane proteins (MPs) Membrane proteins Composition of ...o et al., 1997) 94 NAKH900109 Composition Membrane proteins (MPs) Membrane proteins AA composition ...a et al., 1990) 95 NAKH900111 Composition Membrane proteins (MPs) Membrane proteins Transmembrane r...a et al., 1990) 96 NAKH900112 Composition Membrane proteins (MPs) Membrane proteins Transmembrane r...a et al., 1990) 97 NAKH920108 Composition Membrane proteins (MPs) Membrane protei...multi-spanning) AA composition ...ishikawa, 1992) 98 NAKH920105 Composition Membrane proteins (MPs) Membrane protei...ingle-spanning) AA composition ...ishikawa, 1992) 99 NAKH900103 Composition Membrane proteins (MPs) Mitochondrial proteins AA composition ...a et al., 1990) 100 NAKH900107 Composition Membrane proteins (MPs) Mitochondrial proteins AA composition ...a et al., 1990) 101 FUKS010108 Composition Membrane proteins (MPs) Nuclear proteins (interior) Interior compos...ishikawa, 2001) 102 KUMS000104 Composition Membrane proteins (MPs) Proteins of mesophiles Distribution of...r et al., 2000) 103 FUKS010107 Composition Membrane proteins (MPs) Proteins of mesophiles (EXT) Interior compos...ishikawa, 2001) 104 FUKS010106 Composition Membrane proteins (MPs) Proteins of mesophiles (INT) Interior compos...ishikawa, 2001) 105 FUKS010105 Composition Membrane proteins (MPs) Proteins of thermophiles (INT) Interior compos...ishikawa, 2001) 106 NAKH900104 Composition Mitochondrial proteins Mitochondrial proteins Normalized comp...a et al., 1990) 107 NAKH900105 Composition Mitochondrial proteins Mitochondrial proteins AA composition ...a et al., 1990) 108 NAKH900106 Composition Mitochondrial proteins Mitochondrial proteins Normalized comp...a et al., 1990) 109 NAKH900108 Composition Mitochondrial proteins Mitochondrial proteins Normalized comp...a et al., 1990) 110 PUNT030101 Composition MPs (anchor) Membrane proteins (anchor) Knowledge-based...-Maritan, 2003) 111 PUNT030102 Composition MPs (anchor) Membrane proteins (anchor) Knowledge-based...-Maritan, 2003) 112 OOBM770103 Composition MPs (anchor) Non-bonded Energy per Atom Long range non-...take-Ooi, 1977) 113 GUYH850101 Composition MPs (anchor) Partition energy Partition energy (Guy, 1985) 114 GUYH850102 Composition MPs (anchor) Partition energy Apparent partit...dex (Guy, 1985) 115 MIYS990101 Composition MPs (anchor) Partition energy Relative partit...Jernigan, 1999) 116 MIYS990102 Composition MPs (anchor) Partition energy Optimized relat...Jernigan, 1999) 117 MIYS990103 Composition MPs (anchor) Partition energy Optimized relat...Jernigan, 1999) 118 MIYS990104 Composition MPs (anchor) Partition energy Optimized relat...Jernigan, 1999) 119 MIYS990105 Composition MPs (anchor) Partition energy Optimized relat...Jernigan, 1999) 120 BULH740101 Composition MPs (anchor) TFE to surface Transfer free e...l-Breese, 1974) 121 NAKH900113 Composition Unclassified (Composition) Average Composition Ratio of averag...a et al., 1990) 122 GRAR740101 Composition Unclassified (Composition) Substitution Frequency Composition (Grantham, 1974) 123 GEIM800108 Conformation Coil Aperiodic indices Aperiodic indic...-Roberts, 1980) 124 GEIM800111 Conformation Coil Aperiodic indices Aperiodic indic...-Roberts, 1980) 125 CHAM830101 Conformation Coil Coil The Chou-Fasman...-Charton, 1983) 126 GEIM800110 Conformation Coil Coil Aperiodic indic...-Roberts, 1980) 127 NAGK730103 Conformation Coil Coil Normalized freq... (Nagano, 1973) 128 QIAN880130 Conformation Coil Coil Weights for coi...ejnowski, 1988) 129 QIAN880131 Conformation Coil Coil Weights for coi...ejnowski, 1988) 130 QIAN880132 Conformation Coil Coil Weights for coi...ejnowski, 1988) 131 QIAN880133 Conformation Coil Coil Weights for coi...ejnowski, 1988) 132 QIAN880134 Conformation Coil Coil Weights for coi...ejnowski, 1988) 133 QIAN880135 Conformation Coil Coil Weights for coi...ejnowski, 1988) 134 ROBB760112 Conformation Coil Coil Information mea...n-Suzuki, 1976) 135 CHOP780207 Conformation Coil Non helical reg...on (C-terminal) Normalized freq...-Fasman, 1978b) 136 QIAN880136 Conformation Coil (C-term) Coil (C-terminal) Weights for coi...ejnowski, 1988) 137 QIAN880137 Conformation Coil (C-term) Coil (C-terminal) Weights for coi...ejnowski, 1988) 138 QIAN880138 Conformation Coil (C-term) Coil (C-terminal) Weights for coi...ejnowski, 1988) 139 ROBB760107 Conformation Coil (C-term) Coil (C-terminal) Information mea...n-Suzuki, 1976) 140 QIAN880127 Conformation Coil (N-term) Coil (N-terminal) Weights for coi...ejnowski, 1988) 141 QIAN880128 Conformation Coil (N-term) Coil (N-terminal) Weights for coi...ejnowski, 1988) 142 GEOR030105 Conformation Coil (N-term) Linker (small) Linker propensi...-Heringa, 2003) 143 GEOR030101 Conformation Linker (>14 AA) Linker Linker propensi...-Heringa, 2003) 144 GEOR030102 Conformation Linker (>14 AA) Linker (1) Linker propensi...-Heringa, 2003) 145 GEOR030107 Conformation Linker (>14 AA) Linker (Long) Linker propensi...-Heringa, 2003) 146 GEOR030109 Conformation Linker (>14 AA) Linker (Non-Helical) Linker propensi...-Heringa, 2003) 147 FINA910102 Conformation Linker (>14 AA) α-helix (C-term, out) Helix initiatio...n et al., 1991) 148 ONEK900102 Conformation Linker (>14 AA) α-helix (C-term, out) Helix formation...-DeGrado, 1990) 149 GEOR030103 Conformation Linker (6-14 AA) Linker (2) Linker propensi...-Heringa, 2003) 150 GEOR030104 Conformation Linker (6-14 AA) Linker (3) Linker propensi...-Heringa, 2003) 151 GEOR030106 Conformation Linker (6-14 AA) Linker (medium) Linker propensi...-Heringa, 2003) 152 AURR980118 Conformation Linker (6-14 AA) α-helix (C-terminal, outside) Normalized posi...ora-Rose, 1998) 153 AURR980101 Conformation Linker (6-14 AA) α-helix (N-terminal, outside) Normalized posi...ora-Rose, 1998) 154 AURR980102 Conformation Linker (6-14 AA) α-helix (N-terminal, outside) Normalized posi...ora-Rose, 1998) 155 QIAN880139 Conformation Unclassified (Conformation) Coil (C-terminal) Weights for coi...ejnowski, 1988) 156 QIAN880129 Conformation Unclassified (Conformation) Coil (N-terminal) Weights for coi...ejnowski, 1988) 157 ISOY800107 Conformation Unclassified (Conformation) Double bend Normalized rela...i et al., 1980) 158 VASM830103 Conformation Unclassified (Conformation) Extended Relative popula...z et al., 1983) 159 RACS820104 Conformation Unclassified (Conformation) Extended (left-handed) Average relativ...Scheraga, 1982) 160 RACS820112 Conformation Unclassified (Conformation) Extended (right-handed) Average relativ...Scheraga, 1982) 161 VASM830101 Conformation Unclassified (Conformation) α-helix Relative popula...z et al., 1983) 162 RICJ880114 Conformation Unclassified (Conformation) α-helix (C-terminal, inside) Relative prefer...chardson, 1988) 163 AURR980120 Conformation Unclassified (Conformation) α-helix (C-terminal, outside) Normalized posi...ora-Rose, 1998) 164 RICJ880117 Conformation Unclassified (Conformation) α-helix (C-terminal, outside) Relative prefer...chardson, 1988) 165 RACS820103 Conformation Unclassified (Conformation) α-helix (left-handed) Average relativ...Scheraga, 1982) 166 RICJ880108 Conformation Unclassified (Conformation) α-helix (middle) Relative prefer...chardson, 1988) 167 RICJ880104 Conformation Unclassified (Conformation) α-helix (N-terminal, inside) Relative prefer...chardson, 1988) 168 QIAN880101 Conformation Unclassified (Conformation) α-helix (N-terminal) Weights for alp...ejnowski, 1988) 169 GEIM800103 Conformation Unclassified (Conformation) α-helix (β-proteins) Alpha-helix ind...-Roberts, 1980) 170 CHAM830102 Conformation Unclassified (Conformation) β-sheet A parameter def...-Charton, 1983) 171 QIAN880117 Conformation Unclassified (Conformation) β-sheet Weights for bet...ejnowski, 1988) 172 QIAN880123 Conformation Unclassified (Conformation) β-sheet (C-terminal) Weights for bet...ejnowski, 1988) 173 OOBM850102 Conformation Unclassified (Conformation) β-turn (optimized propensity) Optimized prope...e et al., 1985) 174 AURR980109 Conformation α-helix α-helix Normalized posi...ora-Rose, 1998) 175 AURR980111 Conformation α-helix α-helix Normalized posi...ora-Rose, 1998) 176 AURR980112 Conformation α-helix α-helix Normalized posi...ora-Rose, 1998) 177 AURR980113 Conformation α-helix α-helix Normalized posi...ora-Rose, 1998) 178 BEGF750101 Conformation α-helix α-helix Conformational ...in-Dirkx, 1975) 179 BURA740101 Conformation α-helix α-helix Normalized freq...s et al., 1974) 180 CHOP780201 Conformation α-helix α-helix Normalized freq...-Fasman, 1978b) 181 GEIM800101 Conformation α-helix α-helix Alpha-helix ind...-Roberts, 1980) 182 GEIM800104 Conformation α-helix α-helix Alpha-helix ind...-Roberts, 1980) 183 ISOY800101 Conformation α-helix α-helix Normalized rela...i et al., 1980) 184 KANM800101 Conformation α-helix α-helix Average relativ...sa-Tsong, 1980) 185 KANM800103 Conformation α-helix α-helix Average relativ...sa-Tsong, 1980) 186 LEVM780101 Conformation α-helix α-helix Normalized freq... (Levitt, 1978) 187 LEVM780104 Conformation α-helix α-helix Normalized freq... (Levitt, 1978) 188 MAXF760101 Conformation α-helix α-helix Normalized freq...Scheraga, 1976) 189 NAGK730101 Conformation α-helix α-helix Normalized freq... (Nagano, 1973) 190 PALJ810101 Conformation α-helix α-helix Normalized freq...u et al., 1981) 191 PALJ810102 Conformation α-helix α-helix Normalized freq...u et al., 1981) 192 PALJ810109 Conformation α-helix α-helix Normalized freq...u et al., 1981) 193 PRAM900102 Conformation α-helix α-helix Relative freque...bhakaran, 1990) 194 QIAN880105 Conformation α-helix α-helix Weights for alp...ejnowski, 1988) 195 QIAN880109 Conformation α-helix α-helix Weights for alp...ejnowski, 1988) 196 QIAN880110 Conformation α-helix α-helix Weights for alp...ejnowski, 1988) 197 RACS820108 Conformation α-helix α-helix Average relativ...Scheraga, 1982) 198 RICJ880112 Conformation α-helix α-helix Relative prefer...chardson, 1988) 199 ROBB760101 Conformation α-helix α-helix Information mea...n-Suzuki, 1976) 200 TANS770101 Conformation α-helix α-helix Normalized freq...Scheraga, 1977) 201 AURR980110 Conformation α-helix α-helix (middle) Normalized posi...ora-Rose, 1998) 202 CRAJ730101 Conformation α-helix α-helix (middle) Normalized freq...d et al., 1973) 203 QIAN880106 Conformation α-helix α-helix (middle) Weights for alp...ejnowski, 1988) 204 QIAN880107 Conformation α-helix α-helix (middle) Weights for alp...ejnowski, 1988) 205 QIAN880108 Conformation α-helix α-helix (middle) Weights for alp...ejnowski, 1988) 206 RICJ880109 Conformation α-helix α-helix (middle) Relative prefer...chardson, 1988) 207 ROBB760103 Conformation α-helix α-helix (middle) Information mea...n-Suzuki, 1976) 208 AURR980108 Conformation α-helix α-helix (N-terminal, inside) Normalized posi...ora-Rose, 1998) 209 QIAN880104 Conformation α-helix α-helix (N-terminal, inside) Weights for alp...ejnowski, 1988) 210 AURR980116 Conformation α-helix (C-cap) α-helix (C-terminal, C-cap) Normalized posi...ora-Rose, 1998) 211 FINA910103 Conformation α-helix (C-cap) α-helix (C-terminal, inside) Helix terminati...n et al., 1991) 212 RICJ880113 Conformation α-helix (C-cap) α-helix (C-terminal, inside) Relative prefer...chardson, 1988) 213 FINA910104 Conformation α-helix (C-cap) α-helix termination Helix terminati...n et al., 1991) 214 MAXF760106 Conformation α-helix (C-term, out) α region Normalized freq...Scheraga, 1976) 215 AURR980119 Conformation α-helix (C-term, out) α-helix (C-terminal, outside) Normalized posi...ora-Rose, 1998) 216 ISOY800106 Conformation α-helix (C-term, out) α-helix (C-terminal, outside) Normalized rela...i et al., 1980) 217 RICJ880116 Conformation α-helix (C-term, out) α-helix (C-terminal, outside) Relative prefer...chardson, 1988) 218 TANS770102 Conformation α-helix (C-term, out) α-helix (C-terminal, outside) Normalized freq...Scheraga, 1977) 219 BLAM930101 Conformation α-helix (C-term) α-helix Alpha helix pro...r et al., 1993) 220 AURR980114 Conformation α-helix (C-term) α-helix (C-terminal) Normalized posi...ora-Rose, 1998) 221 AURR980115 Conformation α-helix (C-term) α-helix (C-terminal) Normalized posi...ora-Rose, 1998) 222 CHOP780205 Conformation α-helix (C-term) α-helix (C-terminal) Normalized freq...-Fasman, 1978b) 223 QIAN880111 Conformation α-helix (C-term) α-helix (C-terminal) Weights for alp...ejnowski, 1988) 224 QIAN880112 Conformation α-helix (C-term) α-helix (C-terminal) Weights for alp...ejnowski, 1988) 225 ROBB760104 Conformation α-helix (C-term) α-helix (C-terminal) Information mea...n-Suzuki, 1976) 226 RICJ880110 Conformation α-helix (C-term) α-helix (middle) Relative prefer...chardson, 1988) 227 ISOY800108 Conformation α-helix (left-handed) Coil (normalize...w Prolin value) Normalized rela...i et al., 1980) 228 TANS770109 Conformation α-helix (left-handed) Coil (normalize...w Prolin value) Normalized freq...Scheraga, 1977) 229 KIMC930101 Conformation α-helix (left-handed) Free energy (β-sheet) Thermodynamic b...Kim-Berg, 1993) 230 AURR980117 Conformation α-helix (left-handed) α-helix (C-terminal, C-cap) Normalized posi...ora-Rose, 1998) 231 RICJ880115 Conformation α-helix (left-handed) α-helix (C-terminal, C-cap) Relative prefer...chardson, 1988) 232 KOEP990101 Conformation α-helix (left-handed) α-helix (left-handed) Alpha-helix pro...l-Levitt, 1999) 233 MAXF760104 Conformation α-helix (left-handed) α-helix (left-handed) Normalized freq...Scheraga, 1976) 234 MAXF760105 Conformation α-helix (left-handed) α-helix (left-handed) Normalized freq...Scheraga, 1976) 235 RACS820109 Conformation α-helix (left-handed) α-helix (left-handed) Average relativ...Scheraga, 1982) 236 TANS770107 Conformation α-helix (left-handed) α-helix (left-handed) Normalized freq...Scheraga, 1977) 237 PALJ810113 Conformation α-helix (left-handed) β-turn (α class) Normalized freq...u et al., 1981) 238 CHOP780206 Conformation α-helix (N-cap) Non helical reg...on (N-terminal) Normalized freq...-Fasman, 1978b) 239 AURR980104 Conformation α-helix (N-cap) α-helix (N-terminal, N-cap) Normalized posi...ora-Rose, 1998) 240 AURR980105 Conformation α-helix (N-cap) α-helix (N-terminal, N-cap) Normalized posi...ora-Rose, 1998) 241 RICJ880103 Conformation α-helix (N-cap) α-helix (N-terminal, N-cap) Relative prefer...chardson, 1988) 242 FINA910101 Conformation α-helix (N-cap) α-helix initiation Helix initiatio...n et al., 1991) 243 AURR980103 Conformation α-helix (N-term, out) α-helix (N-terminal, outside) Normalized posi...ora-Rose, 1998) 244 RICJ880101 Conformation α-helix (N-term, out) α-helix (N-terminal, outside) Relative prefer...chardson, 1988) 245 RICJ880102 Conformation α-helix (N-term, out) α-helix (N-terminal, outside) Relative prefer...chardson, 1988) 246 AURR980107 Conformation α-helix (N-term) α-helix (N-terminal, inside) Normalized posi...ora-Rose, 1998) 247 QIAN880102 Conformation α-helix (N-term) α-helix (N-terminal, inside) Weights for alp...ejnowski, 1988) 248 AURR980106 Conformation α-helix (N-term) α-helix (N-terminal) Normalized posi...ora-Rose, 1998) 249 CHOP780204 Conformation α-helix (N-term) α-helix (N-terminal) Normalized freq...-Fasman, 1978b) 250 RICJ880105 Conformation α-helix (N-term) α-helix (N-terminal) Relative prefer...chardson, 1988) 251 RICJ880106 Conformation α-helix (N-term) α-helix (N-terminal) Relative prefer...chardson, 1988) 252 ROBB760102 Conformation α-helix (N-term) α-helix (N-terminal) Information mea...n-Suzuki, 1976) 253 PALJ810108 Conformation α-helix (α-proteins) α-helix (N-terminal, inside) Normalized freq...u et al., 1981) 254 QIAN880103 Conformation α-helix (α-proteins) α-helix (N-terminal, inside) Weights for alp...ejnowski, 1988) 255 RACS820102 Conformation α-helix (α-proteins) α-helix (right-handed) Average relativ...Scheraga, 1982) 256 GEIM800102 Conformation α-helix (α-proteins) α-helix (α-proteins) Alpha-helix ind...-Roberts, 1980) 257 PALJ810107 Conformation α-helix (α-proteins) α-helix (α-proteins) Normalized freq...u et al., 1981) 258 RACS820105 Conformation β-sheet Extended Average relativ...Scheraga, 1982) 259 BEGF750102 Conformation β-sheet β-sheet Conformational ...in-Dirkx, 1975) 260 CHOP780202 Conformation β-sheet β-sheet Normalized freq...-Fasman, 1978b) 261 CHOP780208 Conformation β-sheet β-sheet Normalized freq...-Fasman, 1978b) 262 CHOP780209 Conformation β-sheet β-sheet Normalized freq...-Fasman, 1978b) 263 CRAJ730102 Conformation β-sheet β-sheet Normalized freq...d et al., 1973) 264 KANM800102 Conformation β-sheet β-sheet Average relativ...sa-Tsong, 1980) 265 LEVM780102 Conformation β-sheet β-sheet Normalized freq... (Levitt, 1978) 266 LEVM780105 Conformation β-sheet β-sheet Normalized freq... (Levitt, 1978) 267 NAGK730102 Conformation β-sheet β-sheet Normalized freq... (Nagano, 1973) 268 PALJ810103 Conformation β-sheet β-sheet Normalized freq...u et al., 1981) 269 PALJ810104 Conformation β-sheet β-sheet Normalized freq...u et al., 1981) 270 PALJ810110 Conformation β-sheet β-sheet Normalized freq...u et al., 1981) 271 PALJ810111 Conformation β-sheet β-sheet Normalized freq...u et al., 1981) 272 PALJ810112 Conformation β-sheet β-sheet Normalized freq...u et al., 1981) 273 PRAM900103 Conformation β-sheet β-sheet Relative freque...bhakaran, 1990) 274 QIAN880118 Conformation β-sheet β-sheet Weights for bet...ejnowski, 1988) 275 QIAN880119 Conformation β-sheet β-sheet Weights for bet...ejnowski, 1988) 276 QIAN880120 Conformation β-sheet β-sheet Weights for bet...ejnowski, 1988) 277 QIAN880121 Conformation β-sheet β-sheet Weights for bet...ejnowski, 1988) 278 ROBB760106 Conformation β-sheet β-sheet Information mea...n-Suzuki, 1976) 279 ISOY800105 Conformation β-sheet (C-term) β-sheet (C-terminal) Normalized rela...i et al., 1980) 280 QIAN880124 Conformation β-sheet (C-term) β-sheet (C-terminal) Weights for bet...ejnowski, 1988) 281 QIAN880125 Conformation β-sheet (C-term) β-sheet (C-terminal) Weights for bet...ejnowski, 1988) 282 QIAN880126 Conformation β-sheet (C-term) β-sheet (C-terminal) Weights for bet...ejnowski, 1988) 283 CHOP780212 Conformation β-sheet (C-term) β-turn (1st residue) Frequency of th...-Fasman, 1978b) 284 KOEP990102 Conformation β-sheet (N-term) Extended (designed β-sheet) Beta-sheet prop...l-Levitt, 1999) 285 RACS820101 Conformation β-sheet (N-term) α-helix with fl...α structure (i) Average relativ...Scheraga, 1982) 286 QIAN880114 Conformation β-sheet (N-term) β-sheet (N-terminal) Weights for bet...ejnowski, 1988) 287 QIAN880115 Conformation β-sheet (N-term) β-sheet (N-terminal) Weights for bet...ejnowski, 1988) 288 QIAN880116 Conformation β-sheet (N-term) β-sheet (N-terminal) Weights for bet...ejnowski, 1988) 289 BURA740102 Conformation β-strand Extended Normalized freq...s et al., 1974) 290 ISOY800102 Conformation β-strand Extended Normalized rela...i et al., 1980) 291 MAXF760102 Conformation β-strand Extended Normalized freq...Scheraga, 1976) 292 RACS820111 Conformation β-strand Extended Average relativ...Scheraga, 1982) 293 ROBB760105 Conformation β-strand Extended Information mea...n-Suzuki, 1976) 294 TANS770103 Conformation β-strand Extended Normalized freq...Scheraga, 1977) 295 BAEK050101 Conformation β-strand Linker index (n...AA long region) Linker index (B...e et al., 2005) 296 KANM800104 Conformation β-strand β-sheet Average relativ...sa-Tsong, 1980) 297 QIAN880122 Conformation β-strand β-sheet Weights for bet...ejnowski, 1988) 298 GEIM800105 Conformation β-strand β-strand Beta-strand ind...-Roberts, 1980) 299 GEIM800106 Conformation β-strand β-strand Beta-strand ind...-Roberts, 1980) 300 GEIM800107 Conformation β-strand β-strand Beta-strand ind...-Roberts, 1980) 301 LIFS790101 Conformation β-strand β-strand Conformational ...n-Sander, 1979) 302 LIFS790102 Conformation β-strand β-strand Conformational ...n-Sander, 1979) 303 LIFS790103 Conformation β-strand β-strand Conformational ...n-Sander, 1979) 304 RACS820110 Conformation β-turn Extended (left-handed) Average relativ...Scheraga, 1982) 305 RACS820106 Conformation β-turn Extended (right-handed) Average relativ...Scheraga, 1982) 306 CHOP780211 Conformation β-turn Non β region (C-terminal) Normalized freq...-Fasman, 1978b) 307 BEGF750103 Conformation β-turn β-turn Conformational ...in-Dirkx, 1975) 308 CHOP780101 Conformation β-turn β-turn Normalized freq...-Fasman, 1978a) 309 CHOP780203 Conformation β-turn β-turn Normalized freq...-Fasman, 1978b) 310 CRAJ730103 Conformation β-turn β-turn Normalized freq...d et al., 1973) 311 ISOY800103 Conformation β-turn β-turn Normalized rela...i et al., 1980) 312 LEVM780103 Conformation β-turn β-turn Normalized freq... (Levitt, 1978) 313 LEVM780106 Conformation β-turn β-turn Normalized freq... (Levitt, 1978) 314 LEWP710101 Conformation β-turn β-turn Frequency of oc...s et al., 1971) 315 PALJ810105 Conformation β-turn β-turn Normalized freq...u et al., 1981) 316 PALJ810106 Conformation β-turn β-turn Normalized freq...u et al., 1981) 317 PALJ810114 Conformation β-turn β-turn Normalized freq...u et al., 1981) 318 PALJ810115 Conformation β-turn β-turn Normalized freq...u et al., 1981) 319 PRAM900104 Conformation β-turn β-turn Relative freque...bhakaran, 1990) 320 ROBB760113 Conformation β-turn β-turn Information mea...n-Suzuki, 1976) 321 TANS770110 Conformation β-turn β-turn Normalized freq...Scheraga, 1977) 322 CHOP780216 Conformation β-turn β-turn (middle) Normalized freq...-Fasman, 1978b) 323 ROBB760110 Conformation β-turn β-turn (middle) Information mea...n-Suzuki, 1976) 324 PALJ810116 Conformation β-turn β-turn (α/β class) Normalized freq...u et al., 1981) 325 RACS820107 Conformation β-turn (C-term) α-helix with fl...structure (i+1) Average relativ...Scheraga, 1982) 326 ROBB760108 Conformation β-turn (C-term) β-turn Information mea...n-Suzuki, 1976) 327 CHOP780214 Conformation β-turn (C-term) β-turn (3rd residue) Frequency of th...-Fasman, 1978b) 328 TANS770105 Conformation β-turn (C-term) β-turn (3rd residue) Normalized freq...Scheraga, 1977) 329 CHOP780215 Conformation β-turn (C-term) β-turn (4th residue) Frequency of th...-Fasman, 1978b) 330 ROBB760111 Conformation β-turn (C-term) β-turn (C-terminal) Information mea...n-Suzuki, 1976) 331 GEIM800109 Conformation β-turn (N-term) Aperiodic indices Aperiodic indic...-Roberts, 1980) 332 CHOP780210 Conformation β-turn (N-term) Non β region (N-terminal) Normalized freq...-Fasman, 1978b) 333 ROBB760109 Conformation β-turn (N-term) β-turn (1st residue) Information mea...n-Suzuki, 1976) 334 CHOP780213 Conformation β-turn (N-term) β-turn (2nd residue) Frequency of th...-Fasman, 1978b) 335 ISOY800104 Conformation β-turn (N-term) β-turn (2nd residue) Normalized rela...i et al., 1980) 336 TANS770104 Conformation β-turn (N-term) β-turn (2nd residue) Normalized freq...Scheraga, 1977) 337 MONM990101 Conformation β-turn (TM helix) β-turn (TM helix) Turn propensity...e et al., 1999) 338 MONM990201 Conformation β-turn (TM helix) β-turn (TM helix) Averaged turn p...e et al., 1999) 339 TANS770106 Conformation β-turn (TM helix) β-turn in double bend Normalized freq...Scheraga, 1977) 340 MAXF760103 Conformation β/α-bridge β/α-bridge Normalized freq...Scheraga, 1976) 341 TANS770108 Conformation β/α-bridge β/α-bridge Normalized freq...Scheraga, 1977) 342 SUYM030101 Conformation π-helix Linker index (n...AA long region) Linker propensi...ma-Ohara, 2003) 343 RICJ880107 Conformation π-helix α-helix Relative prefer...chardson, 1988) 344 RICJ880111 Conformation π-helix α-helix Relative prefer...chardson, 1988) 345 QIAN880113 Conformation π-helix α-helix (C-terminal) Weights for alp...ejnowski, 1988) 346 FODM020101 Conformation π-helix π-helix Propensity of a...aradaghi, 2002) 347 KLEP840101 Energy Charge Charge Net charge (Kle...n et al., 1984) 348 CHAM830108 Energy Charge Charge (donor) A parameter of ...-Charton, 1983) 349 FAUJ880112 Energy Charge (negative) Charge (negative) Negative charge...e et al., 1988) 350 CHAM830107 Energy Charge (negative) Charge (transfer) A parameter of ...-Charton, 1983) 351 FAUJ880111 Energy Charge (positive) Charge (positive) Positive charge...e et al., 1988) 352 FAUJ880108 Energy Electron-ion interaction pot. Electrical Effect Localized Elect...e et al., 1988) 353 COSI940101 Energy Electron-ion interaction pot. Electron-ion in...ction potential Electron-ion in...s (Cosic, 1994) 354 VELV850101 Energy Electron-ion interaction pot. Electron-ion in...ction potential Electron-ion in...c et al., 1985) 355 HUTJ700102 Energy Entropy Entropy Absolute entrop...Hutchens, 1970) 356 HUTJ700103 Energy Entropy Entropy Entropy of form...Hutchens, 1970) 357 OOBM770102 Energy Entropy Non-bonded energy per atom Short and mediu...take-Ooi, 1977) 358 MUNV940101 Energy Free energy (folding) Free energy (α-helix) Free energy in ...-Serrano, 1994) 359 MUNV940102 Energy Free energy (folding) Free energy (α-helix) Free energy in ...-Serrano, 1994) 360 MUNV940103 Energy Free energy (folding) Free energy (β-strand) Free energy in ...-Serrano, 1994) 361 MUNV940104 Energy Free energy (folding) Free energy (β-strand) Free energy in ...-Serrano, 1994) 362 MUNV940105 Energy Free energy (folding) Free energy (β-strand) Free energy in ...-Serrano, 1994) 363 YUTK870101 Energy Free energy (unfolding) Free energy (unfolding) Unfolding Gibbs...i et al., 1987) 364 YUTK870102 Energy Free energy (unfolding) Free energy (unfolding) Unfolding Gibbs...i et al., 1987) 365 YUTK870103 Energy Free energy (unfolding) Free energy (unfolding) Activation Gibb...i et al., 1987) 366 YUTK870104 Energy Free energy (unfolding) Free energy (unfolding) Activation Gibb...i et al., 1987) 367 JANJ790102 Energy Free energy (unfolding) Transfer free e...(TFE) to inside Transfer free e...y (Janin, 1979) 368 RADA880104 Energy Free energy (unfolding) Transfer free e...(TFE) to inside Transfer free e...olfenden, 1988) 369 RADA880105 Energy Free energy (unfolding) Transfer free e...(TFE) to inside Transfer free e...olfenden, 1988) 370 RADA880107 Energy Free energy (unfolding) Transfer free e...(TFE) to inside Energy transfer...olfenden, 1988) 371 EISD860102 Energy Isoelectric point Atom-based hydrophobic moment Atom-based hydr...cLachlan, 1986) 372 ZIMJ680104 Energy Isoelectric point Isoelectric point Isoelectric poi...n et al., 1968) 373 FAUJ880109 Energy Isoelectric point Number hydrogen bond donors Number of hydro...e et al., 1988) 374 VASM830102 Energy Non-bonded energy Free energy (Extended) Relative popula...z et al., 1983) 375 OOBM770104 Energy Non-bonded energy Non-bonded energy per residue Average non-bon...take-Ooi, 1977) 376 OOBM770105 Energy Non-bonded energy Non-bonded energy per residue Short and mediu...take-Ooi, 1977) 377 RADA880103 Energy Non-bonded energy TFE to inside Transfer free e...olfenden, 1988) 378 WERD780103 Energy Unclassified (Energy) Free energy (α-helix) Free energy cha...Scheraga, 1978) 379 WERD780104 Energy Unclassified (Energy) Free energy (α-helix) Free energy cha...Scheraga, 1978) 380 WERD780102 Energy Unclassified (Energy) Free energy change Free energy cha...Scheraga, 1978) 381 HUTJ700101 Energy Unclassified (Energy) Heat capactiy Heat capacity (Hutchens, 1970) 382 OOBM850103 Energy Unclassified (Energy) Transfer free energy (TFE) Optimized trans...e et al., 1985) 383 DAYM780201 Others Mutability Mutability Relative mutabi... et al., 1978b) 384 JOND920102 Others Mutability Mutability Relative mutabi...s et al., 1992) 385 WEBA780101 Others Mutability RF value RF value in hig...er-Lacey, 1978) 386 SNEP660101 Others PC 1 Principal Component 1 (Sneath) Principal compo... (Sneath, 1966) 387 ZIMJ680105 Others PC 2 Principal Compo...t 1 (Zimmerman) RF rank (Zimmer...n et al., 1968) 388 SNEP660102 Others PC 2 Principal Component 2 (Sneath) Principal compo... (Sneath, 1966) 389 WOLS870102 Others PC 3 Principal Component 2 (Wold) Principal prope...d et al., 1987) 390 SNEP660103 Others PC 3 Principal Component 3 (Sneath) Principal compo... (Sneath, 1966) 391 WOLS870103 Others PC 4 Principal Component 3 (Wold) Principal prope...d et al., 1987) 392 SNEP660104 Others PC 4 Principal Component 4 (Sneath) Principal compo... (Sneath, 1966) 393 PARJ860101 Others PC 5 HPLC parameter HPLC parameter ...r et al., 1986) 394 WOLS870101 Others PC 5 Principal Component 1 (Wold) Principal prope...d et al., 1987) 395 VENT840101 Others Unclassified (Others) Bitterness Bitterness (Venanzi, 1984) 396 KHAG800101 Others Unclassified (Others) Kerr-constant The Kerr-consta...an-Moore, 1980) 397 FASG760102 Others Unclassified (Others) Melting point Melting Point (Fasman, 1976) 398 FASG760103 Others Unclassified (Others) Optical rotation Optical rotatio... (Fasman, 1976) 399 ONEK900101 Others Unclassified (Others) ΔG values in peptides Delta G values ...-DeGrado, 1990) 400 MITS020101 Polarity Amphiphilicity Amphiphilicity Amphiphilicity ...u et al., 2002) 401 GARJ730101 Polarity Amphiphilicity Partition coefficient Partition Coeff...l et al., 1973) 402 ZASB820101 Polarity Amphiphilicity Partition coefficient Dependence of P...y et al., 1982) 403 CHAM820101 Polarity Amphiphilicity Polarizability Polarizability ...-Charton, 1982) 404 MCMT640101 Polarity Amphiphilicity Refractivity Refractivity (M...by Jones (1975) 405 LEVM760107 Polarity Amphiphilicity van der Waals p...rameter epsilon van der Waals p... (Levitt, 1976) 406 CORJ870101 Polarity Amphiphilicity (α-helix) Amphiphilicity (α-helix) NNEIG index (Co...e et al., 1987) 407 CORJ870102 Polarity Amphiphilicity (α-helix) Amphiphilicity (α-helix) SWEIG index (Co...e et al., 1987) 408 CORJ870103 Polarity Amphiphilicity (α-helix) Amphiphilicity (α-helix) PRIFT index (Co...e et al., 1987) 409 CORJ870104 Polarity Amphiphilicity (α-helix) Amphiphilicity (α-helix) PRILS index (Co...e et al., 1987) 410 CORJ870105 Polarity Amphiphilicity (α-helix) Amphiphilicity (α-helix) ALTFT index (Co...e et al., 1987) 411 CORJ870106 Polarity Amphiphilicity (α-helix) Amphiphilicity (α-helix) ALTLS index (Co...e et al., 1987) 412 CORJ870107 Polarity Amphiphilicity (α-helix) Amphiphilicity (α-helix) TOTFT index (Co...e et al., 1987) 413 ROSG850102 Polarity Amphiphilicity (α-helix) Mean fractional area loss Mean fractional...e et al., 1985) 414 DESM900101 Polarity Amphiphilicity (α-helix) Membrane preference Membrane prefer...i et al., 1990) 415 DESM900102 Polarity Amphiphilicity (α-helix) Membrane preference Average membran...i et al., 1990) 416 NAKH900110 Polarity Amphiphilicity (α-helix) Membrane preference Normalized comp...a et al., 1990) 417 MEIH800103 Polarity Amphiphilicity (α-helix) Side chain angle (phi) Average side ch...h et al., 1980) 418 ARGP820102 Polarity Amphiphilicity (α-helix) Signal sequence...lical potential Signal sequence...s et al., 1982) 419 HOPA770101 Polarity Hydrophilicity Hydration Number Hydration Numbe...-Charton (1982) 420 OOBM770101 Polarity Hydrophilicity Non-bonded energy per atom Average non-bon...take-Ooi, 1977) 421 OOBM850104 Polarity Hydrophilicity Non-bonded energy per atom Optimized avera...e et al., 1985) 422 FAUJ880110 Polarity Hydrophilicity Number full non...onding orbitals Number of full ...e et al., 1988) 423 ENGD860101 Polarity Hydrophilicity Polarity (hydrophilicity) Hydrophobicity ...n et al., 1986) 424 FASG890101 Polarity Hydrophilicity Polarity (hydrophilicity) Hydrophobicity ... (Fasman, 1989) 425 GRAR740102 Polarity Hydrophilicity Polarity (hydrophilicity) Polarity (Grantham, 1974) 426 HOPT810101 Polarity Hydrophilicity Polarity (hydrophilicity) Hydrophilicity ...pp-Woods, 1981) 427 KIDA850101 Polarity Hydrophilicity Polarity (hydrophilicity) Hydrophobicity-...a et al., 1985) 428 KOEH090101 Polarity Hydrophilicity Polarity (hydrophilicity) Hydrophobicity ...r et al. (2009) 429 KOEH090102 Polarity Hydrophilicity Polarity (hydrophilicity) Hydrophobicity ...r et al. (2009) 430 KOEH090103 Polarity Hydrophilicity Polarity (hydrophilicity) Hydrophobicity ...r et al. (2009) 431 KOEH090104 Polarity Hydrophilicity Polarity (hydrophilicity) Hydrophobicity ...r et al. (2009) 432 KOEH090105 Polarity Hydrophilicity Polarity (hydrophilicity) Hydrophobicity ...r et al. (2009) 433 KOEH090106 Polarity Hydrophilicity Polarity (hydrophilicity) Hydrophobicity ...r et al. (2009) 434 KOEH090107 Polarity Hydrophilicity Polarity (hydrophilicity) Hydrophobicity ...r et al. (2009) 435 KOEH090108 Polarity Hydrophilicity Polarity (hydrophilicity) Hydrophobicity ...r et al. (2009) 436 KOEH090109 Polarity Hydrophilicity Polarity (hydrophilicity) Unified Hydroph...r et al., 2009) 437 KOEH090110 Polarity Hydrophilicity Polarity (hydrophilicity) Mammalian Hydro...r et al., 2009) 438 KOEH090111 Polarity Hydrophilicity Polarity (hydrophilicity) Hydrophobicity ...r et al. (2009) 439 KUHL950101 Polarity Hydrophilicity Polarity (hydrophilicity) Hydrophilicity ...n et al., 1995) 440 LEVM760101 Polarity Hydrophilicity Polarity (hydrophilicity) Hydrophobic par... (Levitt, 1976) 441 PRAM900101 Polarity Hydrophilicity Polarity (hydrophilicity) Hydrophobicity ...bhakaran, 1990) 442 WOEC730101 Polarity Hydrophilicity Polarity (hydrophilicity) Polar requireme...t (Woese, 1973) 443 ZIMJ680103 Polarity Hydrophilicity Polarity (hydrophilicity) Polarity (Zimme...n et al., 1968) 444 ROSM880101 Polarity Hydrophilicity Side chain hydropathy Side chain hydr...(Roseman, 1988) 445 ROSM880102 Polarity Hydrophilicity Side chain hydropathy Side chain hydr...(Roseman, 1988) 446 CORJ870108 Polarity Hydrophilicity TOTLS index TOTLS index (Co...e et al., 1987) 447 MIYS850101 Polarity Hydrophobicity Effective partition energy Effective parti...Jernigan, 1985) 448 ROBB790101 Polarity Hydrophobicity Hydration free energy Hydration free ...guthorpe, 1979) 449 ARGP820101 Polarity Hydrophobicity Hydrophobicity Hydrophobicity ...s et al., 1982) 450 CIDH920101 Polarity Hydrophobicity Hydrophobicity Normalized hydr...d et al., 1992) 451 CIDH920102 Polarity Hydrophobicity Hydrophobicity Normalized hydr...d et al., 1992) 452 CIDH920103 Polarity Hydrophobicity Hydrophobicity Normalized hydr...d et al., 1992) 453 CIDH920104 Polarity Hydrophobicity Hydrophobicity Normalized hydr...d et al., 1992) 454 CIDH920105 Polarity Hydrophobicity Hydrophobicity Normalized aver...d et al., 1992) 455 EISD840101 Polarity Hydrophobicity Hydrophobicity Consensus norma...isenberg, 1984) 456 EISD860103 Polarity Hydrophobicity Hydrophobicity Direction of hy...cLachlan, 1986) 457 FAUJ830101 Polarity Hydrophobicity Hydrophobicity Hydrophobic par...e-Pliska, 1983) 458 GOLD730101 Polarity Hydrophobicity Hydrophobicity Hydrophobicity ...halifoux, 1973) 459 JOND750101 Polarity Hydrophobicity Hydrophobicity Hydrophobicity (Jones, 1975) 460 JURD980101 Polarity Hydrophobicity Hydrophobicity Modified Kyte-D...c et al., 1998) 461 KYTJ820101 Polarity Hydrophobicity Hydrophobicity Hydropathy inde...oolittle, 1982) 462 NADH010102 Polarity Hydrophobicity Hydrophobicity Hydropathy scal...h et al., 2001) 463 NADH010103 Polarity Hydrophobicity Hydrophobicity Hydropathy scal...h et al., 2001) 464 NADH010104 Polarity Hydrophobicity Hydrophobicity Hydropathy scal...h et al., 2001) 465 PONP930101 Polarity Hydrophobicity Hydrophobicity Hydrophobicity ...nnuswamy, 1993) 466 RADA880108 Polarity Hydrophobicity Hydrophobicity Mean polarity (...olfenden, 1988) 467 SWER830101 Polarity Hydrophobicity Hydrophobicity Optimal matchin...isenberg, 1983) 468 WILM950101 Polarity Hydrophobicity Hydrophobicity Hydrophobicity ...e et al., 1995) 469 WILM950102 Polarity Hydrophobicity Hydrophobicity Hydrophobicity ...e et al., 1995) 470 ZIMJ680101 Polarity Hydrophobicity Hydrophobicity Hydrophobicity ...n et al., 1968) 471 BROC820101 Polarity Hydrophobicity Hydrophobicity ...on coefficient) Retention Coeff...e et al., 1982) 472 GUOD860101 Polarity Hydrophobicity Hydrophobicity ...on coefficient) Retention Coeff...o et al., 1986) 473 MEEJ800101 Polarity Hydrophobicity Hydrophobicity ...on coefficient) Retention Coeff....4 (Meek, 1980) 474 MEEJ800102 Polarity Hydrophobicity Hydrophobicity ...on coefficient) Retention Coeff....1 (Meek, 1980) 475 MEEJ810101 Polarity Hydrophobicity Hydrophobicity ...on coefficient) Retention Coeff...Rossetti, 1981) 476 MEEJ810102 Polarity Hydrophobicity Hydrophobicity ...on coefficient) Retention Coeff...Rossetti, 1981) 477 BROC820102 Polarity Hydrophobicity Retention coefficient Retention Coeff...e et al., 1982) 478 EISD860101 Polarity Hydrophobicity Solvation free energy Solvation free ...cLachlan, 1986) 479 NOZY710101 Polarity Hydrophobicity Transfer free energy (TFE) Transfer energy...-Tanford, 1971) 480 LAWE840101 Polarity Hydrophobicity Transfer free e...TFE) to outside Transfer free e...n et al., 1984) 481 RADA880101 Polarity Hydrophobicity Transfer free e...TFE) to outside Transfer free e...olfenden, 1988) 482 RADA880102 Polarity Hydrophobicity Transfer free e...TFE) to outside Transfer free e...olfenden, 1988) 483 SIMZ760101 Polarity Hydrophobicity Transfer free e...TFE) to outside Transfer free e...-Charton (1982) 484 WIMW960101 Polarity Hydrophobicity Transfer free e...TFE) to outside Free energies o...ey-White, 1996) 485 CHAM820102 Polarity Hydrophobicity (interface) Free energy (interface) Free energy of ...-Charton, 1982) 486 KOEH090112 Polarity Hydrophobicity (interface) Hydrophobicity (interface) Hydrophobicity ...r et al., 2009) 487 WILM950103 Polarity Hydrophobicity (interface) Hydrophobicity (interface) Hydrophobicity ...e et al., 1995) 488 WOLR790101 Polarity Hydrophobicity (surrounding) Hydration potential Hydrophobicity ...n et al., 1979) 489 WOLR810101 Polarity Hydrophobicity (surrounding) Hydration potential Hydration poten...n et al., 1981) 490 CASG920101 Polarity Hydrophobicity (surrounding) Hydrophobicity Hydrophobicity ...ri-Sippl, 1992) 491 COWR900101 Polarity Hydrophobicity (surrounding) Hydrophobicity Hydrophobicity ...hittaker, 1990) 492 NADH010101 Polarity Hydrophobicity (surrounding) Hydrophobicity Hydropathy scal...h et al., 2001) 493 NADH010105 Polarity Hydrophobicity (surrounding) Hydrophobicity Hydropathy scal...h et al., 2001) 494 NADH010106 Polarity Hydrophobicity (surrounding) Hydrophobicity Hydropathy scal...h et al., 2001) 495 JACR890101 Polarity Hydrophobicity (surrounding) Hydrophobicity (surrounding) Weights from th...bs-White, 1989) 496 BLAS910101 Polarity Hydrophobicity (surrounding) Side chain hydrophobicity Scaled side cha...ck-Mould, 1991) 497 MANP780101 Polarity Hydrophobicity (surrounding) Surrounding hydrophobicity Average surroun...nnuswamy, 1978) 498 PONP800101 Polarity Hydrophobicity (surrounding) Surrounding hydrophobicity Surrounding hyd...y et al., 1980) 499 PONP800102 Polarity Hydrophobicity (surrounding) Surrounding hydrophobicity Average gain in...y et al., 1980) 500 PONP800103 Polarity Hydrophobicity (surrounding) Surrounding hydrophobicity Average gain ra...y et al., 1980) 501 PONP800104 Polarity Hydrophobicity (surrounding) Surrounding hydrophobicity Surrounding hyd...y et al., 1980) 502 PONP800105 Polarity Hydrophobicity (surrounding) Surrounding hydrophobicity Surrounding hyd...y et al., 1980) 503 PONP800106 Polarity Hydrophobicity (surrounding) Surrounding hydrophobicity Surrounding hyd...y et al., 1980) 504 PONP800108 Polarity Hydrophobicity (surrounding) Surrounding hydrophobicity Average number ...y et al., 1980) 505 WILM950104 Polarity Unclassified (Polarity) Hydrophobicity Hydrophobicity ...e et al., 1995) 506 NADH010107 Polarity Unclassified (Polarity) Hydrophobicity ...rmation values) Hydropathy scal...h et al., 2001) 507 FASG760105 Polarity Unclassified (Polarity) pK-C pK-C (Fasman, 1976) 508 FAUJ880113 Polarity Unclassified (Polarity) pK-C pK-a(RCOOH) (Fa...e et al., 1988) 509 JOND750102 Polarity Unclassified (Polarity) pK-C pK (-COOH) (Jones, 1975) 510 FASG760104 Polarity Unclassified (Polarity) pK-N pK-N (Fasman, 1976) 511 KARS160111 Shape Graph (1. eigenvalue) Eigenvalue (average) Average eigenva...-Knisley, 2016) 512 KARS160121 Shape Graph (1. eigenvalue) Eigenvalue (average) Weighted averag...-Knisley, 2016) 513 KARS160109 Shape Graph (1. eigenvalue) Eigenvalue (maximum) Maximum eigenva...-Knisley, 2016) 514 KARS160119 Shape Graph (1. eigenvalue) Eigenvalue (maximum) Weighted maximu...-Knisley, 2016) 515 KARS160108 Shape Graph (1. eigenvalue) Graph (weighted degree) Average weighte...-Knisley, 2016) 516 KARS160112 Shape Graph (2. eigenvalue) Eigenvalue (2. smallest) Second smallest...-Knisley, 2016) 517 KARS160122 Shape Graph (2. eigenvalue) Eigenvalue (2. smallest) Weighted second...-Knisley, 2016) 518 RACS820114 Shape Graph (2. eigenvalue) Side chain angle (Theta) Value of theta(...Scheraga, 1982) 519 PRAM820101 Shape Reduced distance Intercept in regression Intercept in re...nnuswamy, 1982) 520 MEIH800101 Shape Reduced distance Reduced distance (C-α) Average reduced...h et al., 1980) 521 RACS770101 Shape Reduced distance Reduced distance (C-α) Average reduced...Scheraga, 1977) 522 MEIH800102 Shape Reduced distance Reduced distance (side chain) Average reduced...h et al., 1980) 523 RACS770102 Shape Reduced distance Reduced distance (side chain) Average reduced...Scheraga, 1977) 524 PRAM820103 Shape Shape and Surface Correlation coe...t in regression Correlation coe...nnuswamy, 1982) 525 LEVM760104 Shape Shape and Surface Side chain angle (Phi) Side chain tors... (Levitt, 1976) 526 PRAM820102 Shape Shape and Surface Slope in Regression Slope in Regres...nnuswamy, 1982) 527 KARS160117 Shape Side chain length Atomic number (total) Total weighted ...-Knisley, 2016) 528 KARS160105 Shape Side chain length Eccentricity (average) Average eccentr...-Knisley, 2016) 529 KARS160114 Shape Side chain length Eccentricity (average) Average weighte...-Knisley, 2016) 530 KARS160107 Shape Side chain length Eccentricity (maximum) Diameter (maxim...-Knisley, 2016) 531 KARS160116 Shape Side chain length Eccentricity (maximum) Weighted diamet...-Knisley, 2016) 532 KARS160106 Shape Side chain length Eccentricity (minimum) Radius (minimum...-Knisley, 2016) 533 KARS160115 Shape Side chain length Eccentricity (minimum) Weighted radius...-Knisley, 2016) 534 KARS160104 Shape Side chain length Graph (domination number) Weighted domina...-Knisley, 2016) 535 KARS160113 Shape Side chain length Graph (domination number) Weighted domina...-Knisley, 2016) 536 KARS160101 Shape Side chain length Graph (order) Number of verti...-Knisley, 2016) 537 KARS160102 Shape Side chain length Graph (size) Number of edges...-Knisley, 2016) 538 KARS160103 Shape Side chain length Graph (weighted degree) Total weighted ...-Knisley, 2016) 539 CHAM830104 Shape Side chain length n atoms in side chain (2+1) The number of a...-Charton, 1983) 540 CHAM830105 Shape Side chain length n atoms in side chain (3+1) The number of a...-Charton, 1983) 541 CHAM830106 Shape Side chain length n bonds in longest chain The number of b...-Charton, 1983) 542 LEVM760102 Shape Side chain length Side chain length Distance betwee... (Levitt, 1976) 543 LEVM760105 Shape Side chain length Side chain length Radius of gyrat... (Levitt, 1976) 544 FAUJ880104 Shape Side chain length Steric parameter STERIMOL length...e et al., 1988) 545 FAUJ880106 Shape Side chain length Steric paramete...aximum width R) STERIMOL maximu...e et al., 1988) 546 CHAM830103 Shape Steric parameter n atoms in side chain (1+1) The number of a...-Charton, 1983) 547 FAUJ880101 Shape Steric parameter Shape Index Graph shape ind...e et al., 1988) 548 LEVM760103 Shape Steric parameter Side chain angle (theta) Side chain angl... (Levitt, 1976) 549 CHAM810101 Shape Steric parameter Steric parameter Steric paramete...(Charton, 1981) 550 FAUJ880102 Shape Steric parameter Steric parameter Smoothed upsilo...e et al., 1988) 551 FAUJ880105 Shape Steric parameter Steric paramete...inimum width R) STERIMOL minimu...e et al., 1988) 552 KARS160118 Shape Unclassified (Shape) Atomic number (average) Average weighte...-Knisley, 2016) 553 KARS160110 Shape Unclassified (Shape) Eigenvalue (minimum) Minimum eigenva...-Knisley, 2016) 554 KARS160120 Shape Unclassified (Shape) Eigenvalue (minimum) Weighted minimu...-Knisley, 2016) 555 RACS820113 Shape Unclassified (Shape) Side chain angle (theta) Value of theta(...Scheraga, 1982) 556 ROSM880103 Structure-Activity Backbone-dynamics (-CH) Loss of hydropa...helix formation Loss of Side ch...(Roseman, 1988) 557 ANDN920101 Structure-Activity Backbone-dynamics (-CH) α-CH chemical s...kbone-dynamics) alpha-CH chemic...n et al., 1992) 558 BUNA790102 Structure-Activity Backbone-dynamics (-CH) α-CH chemical s...kbone-dynamics) alpha-CH chemic...Wuthrich, 1979) 559 BUNA790103 Structure-Activity Backbone-dynamics (-NH) Spin-spin coupling Spin-spin coupl...Wuthrich, 1979) 560 BUNA790101 Structure-Activity Backbone-dynamics (-NH) α-NH chemical s...kbone-dynamics) alpha-NH chemic...Wuthrich, 1979) 561 BHAR880101 Structure-Activity Flexibility Flexibility Average flexibi...nnuswamy, 1988) 562 PARS000101 Structure-Activity Flexibility Flexibility p-Values of mes...y-Murthy, 2000) 563 PARS000102 Structure-Activity Flexibility Flexibility p-Values of the...y-Murthy, 2000) 564 VINM940101 Structure-Activity Flexibility Flexibility Normalized flex...n et al., 1994) 565 KARP850101 Structure-Activity Flexibility Flexibility (0 ...igid neighbors) Flexibility par...s-Schulz, 1985) 566 VINM940102 Structure-Activity Flexibility Flexibility (0 ...igid neighbors) Normalized flex...n et al., 1994) 567 KARP850102 Structure-Activity Flexibility Flexibility (1 ...igid neighbors) Flexibility par...s-Schulz, 1985) 568 VINM940103 Structure-Activity Flexibility Flexibility (1 ...igid neighbors) Normalized flex...n et al., 1994) 569 KRIW710101 Structure-Activity Flexibility Side chain interaction Side chain inte...um-Rubin, 1971) 570 KRIW790101 Structure-Activity Flexibility Side chain interaction Side chain inte...Komoriya, 1979) 571 OOBM850105 Structure-Activity Flexibility Side chain interaction Optimized side ...e et al., 1985) 572 KARP850103 Structure-Activity Flexibility (2 ...igid neighbors) Flexibility (2 ...igid neighbors) Flexibility par...s-Schulz, 1985) 573 KRIW790102 Structure-Activity Flexibility (2 ...igid neighbors) Flexibility (2 ...igid neighbors) Fraction of sit...Komoriya, 1979) 574 VINM940104 Structure-Activity Flexibility (2 ...igid neighbors) Flexibility (2 ...igid neighbors) Normalized flex...n et al., 1994) 575 BASU050102 Structure-Activity Stability Interactivity Interactivity s...a et al., 2005) 576 TAKK010101 Structure-Activity Stability Stability Side-chain cont...o-Yutani, 2001) 577 ZHOH040101 Structure-Activity Stability Stability The stability s...hou-Zhou, 2004) 578 ZHOH040102 Structure-Activity Stability Stability The relative st...hou-Zhou, 2004) 579 OOBM850101 Structure-Activity Stability Stability (extended-coil) Optimized beta-...e et al., 1985) 580 PTIO830102 Structure-Activity Stability Stability (extended-coil) Beta-coil equil...kelstein, 1983) 581 FAUJ880107 Structure-Activity Stability α-CH chemical s...kbone-dynamics) N.m.r. chemical...e et al., 1988) 582 GEOR030108 Structure-Activity Stability (helix-coil) Linker (helical) Linker propensi...-Heringa, 2003) 583 FINA770101 Structure-Activity Stability (helix-coil) Stability (helix-coil) Helix-coil equi...-Ptitsyn, 1977) 584 PTIO830101 Structure-Activity Stability (helix-coil) Stability (helix-coil) Helix-coil equi...kelstein, 1983) 585 SUEM840101 Structure-Activity Stability (helix-coil) Stability (helix-coil) Zimm-Bragg para...i et al., 1984) 586 SUEM840102 Structure-Activity Unclassified (S...cture-Activity) Stability (extended-coil) Zimm-Bragg para...i et al., 1984) You can show the shape of the complete DataFrame by setting
show_shape=Trueand limit visualization by showing only the firstn_rowsandn_cols:aa.display_df(df_cat, show_shape=True, n_cols=2, n_rows=2)
DataFrame shape: (586, 5)
scale_id category 1 LINS030110 ASA/Volume 2 LINS030113 ASA/Volume Select specific rows and columns using the
show_only_colandshow_only_rowparameters:# Numbering starts with 0 aa.display_df(df_cat, col_to_show="category", row_to_show=1)
category 2 ASA/Volume Limit the number of characters shown in each cell using
char_limit(default=30)aa.display_df(df_cat, n_rows=2, char_limit=10)
scale_id category subcategory scale_name scale_description 1 LINS030110 ASA/Volume Acces...(ASA) ASA (...turn) Total...2003) 2 LINS030113 ASA/Volume Acces...(ASA) ASA (...turn) % tot...2003) Further style options are
fontsize(default=12),max_width_pct(default=100),max_height(default=300):aa.display_df(df_cat, n_rows=2, max_width_pct=50, max_height=100)
scale_id category subcategory scale_name scale_description 1 LINS030110 ASA/Volume Accessible surface area (ASA) ASA (folded coil/turn) Total median ac...s et al., 2003) 2 LINS030113 ASA/Volume Accessible surface area (ASA) ASA (folded coil/turn) % total accessi...s et al., 2003)